From 72a81f8f25b1d9ee66f36ae2bcc3e4cad244aa9c Mon Sep 17 00:00:00 2001
From: aaron <aaron@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 10 Jun 2009 20:01:13 +0000
Subject: [PATCH] removed the requirement that a bam file list be present in
 the XML version of the command line arguments.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@975 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../org/broadinstitute/sting/gatk/GATKArgumentCollection.java   | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java b/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java
index b2dbb7edd..0c0a96606 100755
--- a/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java
+++ b/java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java
@@ -57,7 +57,7 @@ public class GATKArgumentCollection {
     public Map<String, String> walkerArgs = new HashMap<String, String>();    
 
     // parameters and their defaults
-    @ElementList
+    @ElementList(required=false)
     @Argument(fullName = "input_file", shortName = "I", doc = "SAM or BAM file(s)", required = false)
     public List<File> samFiles = new ArrayList<File>();