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Fix exclusive options. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@204 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2009-03-26 20:59:32 +00:00
parent 53fe9acf65
commit 728f932ecf
1 changed files with 4 additions and 1 deletions
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5
java/src/org/broadinstitute/sting/utils/cmdLine/ArgumentParser.java
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@ -136,7 +136,10 @@ public class ArgumentParser {
* @param options A list of pairs of param, field to add. * @param options A list of pairs of param, field to add.
*/ */
private void AddToOptionStorage( List<Pair<Option,Field>> options ) { private void AddToOptionStorage( List<Pair<Option,Field>> options ) {
// Create an option group and mark it 'required'. If any of its constituent parameters
// are NOT required, they'll unset the required bit for the whole group.
OptionGroup optionGroup = new OptionGroup(); OptionGroup optionGroup = new OptionGroup();
optionGroup.setRequired(true);
for( Pair<Option,Field> option: options ) { for( Pair<Option,Field> option: options ) {
if (m_options.hasOption(option.first.getOpt()) ) if (m_options.hasOption(option.first.getOpt()) )
@ -401,7 +404,7 @@ public class ArgumentParser {
/** /**
* Given a field with some annotations, create a command-line option. If not enough data is * Given a field with some annotations, create a command-line option. If not enough data is
* available to create a command-line option, return null. * available to create a command-line option, return null.
* @param source Source class containing the field. * @param sourceName Source class containing the field.
* @param field Field * @param field Field
* @return Option representing the field options. * @return Option representing the field options.
*/ */