diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/GenotypeConcordance.java b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/GenotypeConcordance.java index bf9185800..e66bac2a6 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/GenotypeConcordance.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/GenotypeConcordance.java @@ -307,7 +307,7 @@ public class GenotypeConcordance extends VariantEvaluator implements StandardEva sampleStats.incrValue(sample, truth, called); if ( (truth == Genotype.Type.HOM_VAR || truth == Genotype.Type.HET) && called == Genotype.Type.NO_CALL ) { if ( PRINT_INTERESTING_SITES && super.getVEWalker().printInterestingSites() ) - System.out.printf("%s: HM3 FN => %s%n", group, validation); + ;//System.out.printf("%s: HM3 FN => %s%n", group, validation); } } }