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catch null output destinations earlier 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1843 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-10-14 20:07:15 +00:00
parent 1f66738c8e
commit 727b69fce0
1 changed files with 3 additions and 1 deletions
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4
java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java
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@ -20,7 +20,6 @@ public class VCFGenotypeWriterAdapter implements GenotypeWriter {
private VCFHeader mHeader = null; private VCFHeader mHeader = null;
private String mSource; private String mSource;
private String mReferenceName; private String mReferenceName;
private final Map<String, String> mSampleNames = new HashMap<String, String>();
private boolean mInitialized = false; private boolean mInitialized = false;
private final File mFile; private final File mFile;
private final OutputStream mStream; private final OutputStream mStream;
@ -29,6 +28,7 @@ public class VCFGenotypeWriterAdapter implements GenotypeWriter {
mReferenceName = referenceName; mReferenceName = referenceName;
mSource = source; mSource = source;
mFile = writeTo; mFile = writeTo;
if (mFile == null) throw new RuntimeException("VCF output file must not be null");
mStream = null; mStream = null;
} }
@ -37,6 +37,8 @@ public class VCFGenotypeWriterAdapter implements GenotypeWriter {
mSource = source; mSource = source;
mFile = null; mFile = null;
mStream = writeTo; mStream = writeTo;
if (mStream == null) throw new RuntimeException("VCF output stream must not be null");
} }
/** /**