From 727b69fce08859c29738f58faa51188dd3608803 Mon Sep 17 00:00:00 2001
From: aaron <aaron@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 14 Oct 2009 20:07:15 +0000
Subject: [PATCH] catch null output destinations earlier

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1843 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java    | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java b/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java
index 0a9025bd4..6e1251dae 100644
--- a/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java
+++ b/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java
@@ -20,7 +20,6 @@ public class VCFGenotypeWriterAdapter implements GenotypeWriter {
     private VCFHeader mHeader = null;
     private String mSource;
     private String mReferenceName;
-    private final Map<String, String> mSampleNames = new HashMap<String, String>();
     private boolean mInitialized = false;
     private final File mFile;
     private final OutputStream mStream;
@@ -29,6 +28,7 @@ public class VCFGenotypeWriterAdapter implements GenotypeWriter {
         mReferenceName = referenceName;
         mSource = source;
         mFile = writeTo;
+        if (mFile == null) throw new RuntimeException("VCF output file must not be null");
         mStream = null;
     }
 
@@ -37,6 +37,8 @@ public class VCFGenotypeWriterAdapter implements GenotypeWriter {
         mSource = source;
         mFile = null;
         mStream = writeTo;
+        if (mStream == null) throw new RuntimeException("VCF output stream must not be null");
+
     }
 
     /**