diff --git a/java/test/org/broadinstitute/sting/playground/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersV2IntegrationTest.java b/java/test/org/broadinstitute/sting/playground/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersV2IntegrationTest.java index bed411f4c..816ba8056 100755 --- a/java/test/org/broadinstitute/sting/playground/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersV2IntegrationTest.java +++ b/java/test/org/broadinstitute/sting/playground/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersV2IntegrationTest.java @@ -27,12 +27,12 @@ public class VariantRecalibrationWalkersV2IntegrationTest extends WalkerTest { VRTest yriTrio = new VRTest("yri.trio.gatk_glftrio.intersection.annotated.filtered.chr1.vcf", "aa211561e6e9b1e323dec4eeaa318088", // tranches "226adf939e90ad20599108e77ad25dae", // recal file - "943cb30cad3bc23e4d945b523e1a67cd"); // cut VCF + "06c2335e860e19f23bcacff8d4ab906d"); // cut VCF VRTest lowPass = new VRTest("lowpass.N3.chr1.raw.vcf", "f4f2057a8c010206f0f56deff0602452", // tranches "dd36d252a6dc6e3207addddae731dd88", // recal file - "c142f2a3524dcd7a1a16233670aa5772"); // cut VCF + "af4fe8bd0c2eca92d1990b1a49fae810"); // cut VCF @DataProvider(name = "VRTest") public Object[][] createData1() { @@ -64,6 +64,7 @@ public class VariantRecalibrationWalkersV2IntegrationTest extends WalkerTest { "-R " + b36KGReference + " -T ApplyRecalibration" + " -L 1:60,000,000-115,000,000" + + " -NO_HEADER" + " -B:input,VCF " + params.inVCF + " -o %s" + " -tranchesFile " + getFileForMD5(params.tranchesMD5) +