Merge pull request #1604 from broadinstitute/rhl_close_printstream_1600

Close BQSRGatherer's PrintStream when finished
2017-06-26 13:58:52 -04:00 · 2017-06-26 13:58:52 -04:00 · 71e361dae9
parent fff63bab53 312d97d53b
commit 71e361dae9
1 changed files with 1 additions and 1 deletions
--- a/public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/recalibration/BQSRGatherer.java
+++ b/public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/recalibration/BQSRGatherer.java
@ -61,8 +61,8 @@ public class BQSRGatherer extends Gatherer  {
            throw new UserException.MissingArgument("output", MISSING_OUTPUT_FILE);
        }
        final GATKReport report = gatherReport(inputs);
-        outputFile.close();
        report.print(outputFile);
+        outputFile.close();
    }

    /**