From 714d575e3b3b6983700fd6e1e00b0058022ebd6c Mon Sep 17 00:00:00 2001 From: Ron Levine Date: Thu, 25 Dec 2014 14:00:39 -0500 Subject: [PATCH] correct reference file name --- .../gatk/tools/walkers/phasing/PhasingUtilsUnitTest.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/phasing/PhasingUtilsUnitTest.java b/protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/phasing/PhasingUtilsUnitTest.java index d544e9e38..5c0760dfa 100644 --- a/protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/phasing/PhasingUtilsUnitTest.java +++ b/protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/phasing/PhasingUtilsUnitTest.java @@ -80,7 +80,7 @@ public class PhasingUtilsUnitTest extends BaseTest { @BeforeSuite public void init() throws FileNotFoundException { - referenceFile = new CachingIndexedFastaSequenceFile(new File("/Users/ronlevine/src/human_g1k_v37.fasta")); + referenceFile = new CachingIndexedFastaSequenceFile(new File(b37KGReference)); alleleList1 = Arrays.asList(Allele.create("T", true), Allele.create("C", false)); alleleList2 = Arrays.asList(Allele.create("G", true), Allele.create("A", false)); genotype1 = new GenotypeBuilder().name("sample1").attribute("HP", new String[]{"10-1", "10-2"}).alleles(alleleList1).make();