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correct reference file name

This commit is contained in:
Ron Levine 2014-12-25 14:00:39 -05:00
parent a7fba5c209
commit 714d575e3b
1 changed files with 1 additions and 1 deletions
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protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/phasing/PhasingUtilsUnitTest.java
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@ -80,7 +80,7 @@ public class PhasingUtilsUnitTest extends BaseTest {
@BeforeSuite
public void init() throws FileNotFoundException {
referenceFile = new CachingIndexedFastaSequenceFile(new File("/Users/ronlevine/src/human_g1k_v37.fasta"));
referenceFile = new CachingIndexedFastaSequenceFile(new File(b37KGReference));
alleleList1 = Arrays.asList(Allele.create("T", true), Allele.create("C", false));
alleleList2 = Arrays.asList(Allele.create("G", true), Allele.create("A", false));
genotype1 = new GenotypeBuilder().name("sample1").attribute("HP", new String[]{"10-1", "10-2"}).alleles(alleleList1).make();