From 70f492a6e820c3b24f8242e2def6647a069c2e5a Mon Sep 17 00:00:00 2001 From: depristo Date: Fri, 6 Aug 2010 13:24:21 +0000 Subject: [PATCH] Prints out trivial debugging info git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3957 348d0f76-0448-11de-a6fe-93d51630548a --- R/VariantRecalibratorReport/VariantRecalibratorReport.R | 2 ++ 1 file changed, 2 insertions(+) diff --git a/R/VariantRecalibratorReport/VariantRecalibratorReport.R b/R/VariantRecalibratorReport/VariantRecalibratorReport.R index 78b360844..c98086c01 100644 --- a/R/VariantRecalibratorReport/VariantRecalibratorReport.R +++ b/R/VariantRecalibratorReport/VariantRecalibratorReport.R @@ -224,10 +224,12 @@ if (length(l) > 0) { } for (ann1 in c[[1]]$anns) { + print(ann1) plotAnn(d.known, d.novel, d.loci, ann1, paste(plotRoot, ".anndist.", ann1, ".pdf", sep="")); for (ann2 in c[[1]]$anns) { if (ann1 != ann2) { + print(paste("-- v ", ann2)) plotClusters(d.known, d.novel, d.loci, c, ann1, ann2, paste(plotRoot, ".cluster.", ann1, "_vs_", ann2, ".pdf", sep=""), maxVariants=maxVariants); } }