diff --git a/R/VariantRecalibratorReport/VariantRecalibratorReport.R b/R/VariantRecalibratorReport/VariantRecalibratorReport.R index 78b360844..c98086c01 100644 --- a/R/VariantRecalibratorReport/VariantRecalibratorReport.R +++ b/R/VariantRecalibratorReport/VariantRecalibratorReport.R @@ -224,10 +224,12 @@ if (length(l) > 0) { } for (ann1 in c[[1]]$anns) { + print(ann1) plotAnn(d.known, d.novel, d.loci, ann1, paste(plotRoot, ".anndist.", ann1, ".pdf", sep="")); for (ann2 in c[[1]]$anns) { if (ann1 != ann2) { + print(paste("-- v ", ann2)) plotClusters(d.known, d.novel, d.loci, c, ann1, ann2, paste(plotRoot, ".cluster.", ann1, "_vs_", ann2, ".pdf", sep=""), maxVariants=maxVariants); } }