diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageStats.java b/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageStats.java
index 368015a60..70d1d0f26 100644
--- a/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageStats.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageStats.java
@@ -274,4 +274,16 @@ public class DepthOfCoverageStats {
         return totalDepthOfCoverage;
     }
 
+    public double[] getCoverageProportions(String sample) {
+        int[] hist = granularHistogramBySample.get(sample);
+        double[] distribution = new double[hist.length];
+        long count = 0;
+        for ( int i = hist.length-1; i >= 0; i -- ) {
+            count += hist[i];
+            distribution[i] = ( (double) count) / nLoci;
+        }
+
+        return distribution;
+    }
+
 }
\ No newline at end of file
diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java
index ce41bdaf0..3df549a43 100644
--- a/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java
@@ -476,12 +476,14 @@ public class DepthOfCoverageWalker extends LocusWalker<Map<String,int[]>, Covera
             logger.info("Printing locus summary");
             if ( ! useReadGroup || useBoth ) {
                 File perLocusStatisticsFile = deriveFromStream("sample_locus_statistics");
-                printPerLocus(perLocusStatisticsFile,coverageProfiles.getCoverageBySample());
+                File perLocusCoverageFile = deriveFromStream("sample_coverage_statistics");
+                printPerLocus(perLocusStatisticsFile,perLocusCoverageFile,coverageProfiles.getCoverageBySample());
             }
 
             if ( useReadGroup || useBoth ) {
                 File perLocusRGStats = deriveFromStream("read_group_locus_statistics");
-                printPerLocus(perLocusRGStats,coverageProfiles.getCoverageByReadGroup());
+                File perLocusRGCoverage = deriveFromStream("read_group_locus_coverage");
+                printPerLocus(perLocusRGStats,perLocusRGCoverage,coverageProfiles.getCoverageByReadGroup());
             }
         }
     }
@@ -521,8 +523,9 @@ public class DepthOfCoverageWalker extends LocusWalker<Map<String,int[]>, Covera
         }
     }
 
-    private void printPerLocus(File locusFile, DepthOfCoverageStats stats) {
+    private void printPerLocus(File locusFile, File coverageFile, DepthOfCoverageStats stats) {
         PrintStream output = getCorrectStream(out,locusFile);
+        PrintStream coverageOut = getCorrectStream(out,coverageFile);
         if ( output == null ) {
             return;
         }
@@ -543,14 +546,24 @@ public class DepthOfCoverageWalker extends LocusWalker<Map<String,int[]>, Covera
         header.append(String.format("%n"));
 
         output.print(header);
+        coverageOut.print(header);
 
         for ( int row = 0; row < samples; row ++ ) {
-            output.printf("%s_%d\t","NSamples",row+1);
+            output.printf("%s_%d","NSamples",row+1);
             for ( int depthBin = 0; depthBin < baseCoverageCumDist[0].length; depthBin ++ ) {
-                output.printf("%d\t",baseCoverageCumDist[row][depthBin]);
+                output.printf("\t%d",baseCoverageCumDist[row][depthBin]);
             }
             output.printf("%n");
         }
+
+        for ( String sample : stats.getAllSamples() ) {
+            coverageOut.printf("%s",sample);
+            double[] coverageDistribution = stats.getCoverageProportions(sample);
+            for ( int bin = 0; bin < coverageDistribution.length; bin ++ ) {
+                coverageOut.printf("\t%.2f",coverageDistribution[bin]);
+            }
+            coverageOut.printf("%n");
+        }
     }
 
     private PrintStream getCorrectStream(PrintStream out, File optionalFile) {
diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval/multisample/MultiSampleConcordanceWalker.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval/multisample/MultiSampleConcordanceWalker.java
index 6a0107f11..567125b95 100644
--- a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval/multisample/MultiSampleConcordanceWalker.java
+++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval/multisample/MultiSampleConcordanceWalker.java
@@ -10,13 +10,6 @@ import org.broadinstitute.sting.gatk.walkers.Requires;
 import org.broadinstitute.sting.gatk.walkers.RodWalker;
 import org.broadinstitute.sting.utils.cmdLine.Argument;
 
-/**
- * Created by IntelliJ IDEA.
- * User: chartl
- * Date: Jan 27, 2010
- * Time: 10:40:44 AM
- * To change this template use File | Settings | File Templates.
- */
 /*
  * Calculates per-sample concordance metrics across two multi-sample VCF files; outputs simple counts of concordant
  * variant and genotype calls, genotyping errors, and call errors. Requires a VCF binding with the name 'truth' and
diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageIntegrationTest.java
index 0b20ab38f..6fc0c90f2 100644
--- a/java/test/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageIntegrationTest.java
@@ -60,12 +60,12 @@ public class DepthOfCoverageIntegrationTest extends WalkerTest {
         spec.addAuxFile("959937a9b0ace520b4b7d9915d708003", baseOutputFile);
         spec.addAuxFile("aff2349d6dc221c08f6c469379aeaedf", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".sample_interval_statistics"));
         spec.addAuxFile("6476ed0c54a4307a618aa6d3268b050f", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".sample_interval_summary"));
-        spec.addAuxFile("50870dad272f03f77befb0075baed1cd", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".sample_locus_statistics"));
+        spec.addAuxFile("faf63982622764299c734299ffeb3c63", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".sample_locus_statistics"));
         spec.addAuxFile("65318c1e73d98a59cc6f817cde12d3d4", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".sample_summary_statistics"));
         spec.addAuxFile("ef8c3e2ba3fc0da829e10e2d487c00d2", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".sample_statistics"));
         spec.addAuxFile("223377e07b35e81a394b75b38d8e72ee", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".read_group_interval_statistics"));
         spec.addAuxFile("096f4ed94020327288ea76245ebd6942", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".read_group_interval_summary"));
-        spec.addAuxFile("06ed004c86f8b2ad8e64a3b42a0d85c5", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".read_group_locus_statistics"));
+        spec.addAuxFile("8e391b7b84fc19dff83002b6dd9773d8", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".read_group_locus_statistics"));
         spec.addAuxFile("43c160ff9d754744728c142709011993", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".read_group_statistics"));
         spec.addAuxFile("a374410efe20609c5c4b87a6da7f4d51", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".read_group_summary"));