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Always return deleted bases in upper case 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3218 348d0f76-0448-11de-a6fe-93d51630548a
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asivache 2010-04-20 19:17:40 +00:00
parent 52a570637d
commit 6fda78f93f
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/utils/pileup/ReadBackedExtendedEventPileup.java
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@ -389,7 +389,7 @@ public class ReadBackedExtendedEventPileup implements Iterable<ExtendedEventPile
if ( refBases == null ) { if ( refBases == null ) {
return Integer.toString(length)+"D"; // if we do not have reference bases, we can only report something like "5D" return Integer.toString(length)+"D"; // if we do not have reference bases, we can only report something like "5D"
} else { } else {
return "-"+new String(refBases,1,length); return "-"+new String(refBases,1,length).toUpperCase();
} }
} }