From 6f43284053cbae9e263ac43056b6c4445fc19017 Mon Sep 17 00:00:00 2001
From: Matt Hanna <hanna@broadinstitute.org>
Date: Mon, 25 Jul 2011 15:19:41 -0400
Subject: [PATCH] Switch to including our entire exception tree rather than
 just UserException.

---
 build.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/build.xml b/build.xml
index 295cd95e1..a9348eae3 100644
--- a/build.xml
+++ b/build.xml
@@ -489,7 +489,7 @@
             <fileset dir="${java.classes}">
               <include name="**/utils/codecs/**/*.class"/>
               <include name="**/utils/variantcontext/**/*.class"/>
-              <include name="**/UserException*.class"/>
+              <include name="org/broadinstitute/sting/utils/exceptions/**"/>
             </fileset>
         </jar>
     </target>