From 6fd2d39a7d40c0a8de4d686db5f60a0e94c0fe35 Mon Sep 17 00:00:00 2001
From: weisburd <weisburd@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 9 Jun 2010 17:10:03 +0000
Subject: [PATCH] Modified run_locally mode to use os.system(..) instead of
 popen

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3515 348d0f76-0448-11de-a6fe-93d51630548a
---
 python/genomicAnnotatorScripts/GenerateTranscriptToInfo.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/python/genomicAnnotatorScripts/GenerateTranscriptToInfo.py b/python/genomicAnnotatorScripts/GenerateTranscriptToInfo.py
index 5da9cad62..a4e28dd45 100755
--- a/python/genomicAnnotatorScripts/GenerateTranscriptToInfo.py
+++ b/python/genomicAnnotatorScripts/GenerateTranscriptToInfo.py
@@ -120,7 +120,7 @@ for contig in contigs:
         print("Executing: " + command)
         if run_locally:
             #execute(command, os.path.join(logs_dir,contig+"_log.txt"))
-            execute(command + " >& " + os.path.join(logs_dir,contig+"_log.txt"))
+            os.system(command + " >& " + os.path.join(logs_dir,contig+"_log.txt"))
         else:
             os.system(command)
     else: