diff --git a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala index 804e50421..236516786 100755 --- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala +++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala @@ -320,7 +320,7 @@ class GATKResourcesBundle extends QScript { } class LiftOverPerl(@Input val in: File, @Output val out: File, @Input val chain: File, oldRef: Reference, newRef: Reference) extends CommandLineFunction { - this.memoryLimit = 8 + this.memoryLimit = 12 def commandLine = ("%s -vcf %s -chain %s -out %s " + "-gatk ./ -newRef %s -oldRef %s -tmp %s").format(liftOverPerl, in.getAbsolutePath, chain, out.getAbsolutePath, newRef.file.replace(".fasta", ""),