diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/fasta/CreateSequenomMask.java b/java/src/org/broadinstitute/sting/gatk/walkers/sequenom/CreateSequenomMask.java
similarity index 96%
rename from java/src/org/broadinstitute/sting/gatk/walkers/fasta/CreateSequenomMask.java
rename to java/src/org/broadinstitute/sting/gatk/walkers/sequenom/CreateSequenomMask.java
index 9b4d562db..9eaf0e300 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/fasta/CreateSequenomMask.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/sequenom/CreateSequenomMask.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.gatk.walkers.fasta;
+package org.broadinstitute.sting.gatk.walkers.sequenom;
 
 import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
 import org.broadinstitute.sting.gatk.contexts.ReferenceContext;
diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/fasta/PickSequenomProbes.java b/java/src/org/broadinstitute/sting/gatk/walkers/sequenom/PickSequenomProbes.java
similarity index 99%
rename from java/src/org/broadinstitute/sting/gatk/walkers/fasta/PickSequenomProbes.java
rename to java/src/org/broadinstitute/sting/gatk/walkers/sequenom/PickSequenomProbes.java
index 2cab97543..c2ad5b118 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/fasta/PickSequenomProbes.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/sequenom/PickSequenomProbes.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.gatk.walkers.fasta;
+package org.broadinstitute.sting.gatk.walkers.sequenom;
 
 import org.broadinstitute.sting.gatk.GenomeAnalysisEngine;
 import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/PlinkToVCF.java b/java/src/org/broadinstitute/sting/gatk/walkers/sequenom/SequenomValidationConverter.java
similarity index 98%
rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/PlinkToVCF.java
rename to java/src/org/broadinstitute/sting/gatk/walkers/sequenom/SequenomValidationConverter.java
index f464dfa78..648468ccc 100644
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/PlinkToVCF.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/sequenom/SequenomValidationConverter.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.playground.gatk.walkers.variantstovcf;
+package org.broadinstitute.sting.gatk.walkers.sequenom;
 
 import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
 import org.broadinstitute.sting.gatk.contexts.ReferenceContext;
@@ -25,7 +25,7 @@ import java.util.*;
  * Converts Sequenom files to a VCF annotated with QC metrics (HW-equilibrium, % failed probes)
  */
 @Reference(window=@Window(start=0,stop=40))
-public class PlinkToVCF extends RodWalker<VCFRecord,Integer> {
+public class SequenomValidationConverter extends RodWalker<VCFRecord,Integer> {
     @Argument(fullName="outputVCF", shortName="vcf", doc="The VCF file to write results", required=true)
     protected File vcfFile = null;
     @Argument(fullName="maxHardy", doc="Maximum phred-scaled Hardy-Weinberg violation pvalue to consider an assay valid [default:20]", required=false)
diff --git a/java/test/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/PlinkToVCFIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PlinkToVCFIntegrationTest.java
similarity index 100%
rename from java/test/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/PlinkToVCFIntegrationTest.java
rename to java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PlinkToVCFIntegrationTest.java
diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/SequenomValidationConverterIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/SequenomValidationConverterIntegrationTest.java
new file mode 100755
index 000000000..d4c73b987
--- /dev/null
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/SequenomValidationConverterIntegrationTest.java
@@ -0,0 +1,26 @@
+package org.broadinstitute.sting.gatk.walkers.sequenom;
+
+import org.broadinstitute.sting.WalkerTest;
+import org.junit.Test;
+
+import java.util.Arrays;
+
+public class SequenomValidationConverterIntegrationTest extends WalkerTest {
+    @Test
+    public void testSNPs() {
+        String testPedFile = validationDataLocation + "Sequenom_Test_File.txt";
+        String testArgs = "-R "+oneKGLocation+"reference/human_b36_both.fasta -T SequenomValidationConverter -B input,Plink,"+testPedFile+" -vcf %s";
+        WalkerTest.WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1,
+                Arrays.asList("02dcb683db503599efed0b76daa8fcba"));
+        executeTest("Test SNPs", spec);
+    }
+
+    @Test
+    public void testIndels() {
+        String testPedFile = validationDataLocation + "pilot2_indel_validation.renamed.ped";
+        String testArgs = "-R "+oneKGLocation+"reference/human_b36_both.fasta -T SequenomValidationConverter -B input,Plink,"+testPedFile+" -vcf %s";
+        WalkerTest.WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1,
+                Arrays.asList("e72c0ab95b279a4d39cc14d40770a801"));
+        executeTest("Test Indels", spec);
+    }
+}