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fixed a typo in StringText.properties

This commit is contained in:
Yossi Farjoun 2012-09-05 14:33:08 -04:00
parent 4ea38bbfe8
commit 6e517df5d9
1 changed files with 1 additions and 1 deletions
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2
protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCaller.java
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@ -380,7 +380,7 @@ public class HaplotypeCaller extends ActiveRegionWalker<Integer, Integer> implem
allelesToGenotype.removeAll( activeAllelesToGenotype ); allelesToGenotype.removeAll( activeAllelesToGenotype );
} }
if( !activeRegion.isActive ) { return 0; } // Not active so nothing to do! if( !activeRegion.isActive ) { return 0; } // Not active so nothing to do TODO : YOSSI Write something smart!!
if( activeRegion.size() == 0 && UG_engine.getUAC().GenotypingMode != GenotypeLikelihoodsCalculationModel.GENOTYPING_MODE.GENOTYPE_GIVEN_ALLELES ) { return 0; } // No reads here so nothing to do! if( activeRegion.size() == 0 && UG_engine.getUAC().GenotypingMode != GenotypeLikelihoodsCalculationModel.GENOTYPING_MODE.GENOTYPE_GIVEN_ALLELES ) { return 0; } // No reads here so nothing to do!
if( UG_engine.getUAC().GenotypingMode == GenotypeLikelihoodsCalculationModel.GENOTYPING_MODE.GENOTYPE_GIVEN_ALLELES && activeAllelesToGenotype.isEmpty() ) { return 0; } // No alleles found in this region so nothing to do! if( UG_engine.getUAC().GenotypingMode == GenotypeLikelihoodsCalculationModel.GENOTYPING_MODE.GENOTYPE_GIVEN_ALLELES && activeAllelesToGenotype.isEmpty() ) { return 0; } // No alleles found in this region so nothing to do!