diff --git a/public/gatk-utils/src/main/java/org/broadinstitute/gatk/utils/clipping/ReadClipper.java b/public/gatk-utils/src/main/java/org/broadinstitute/gatk/utils/clipping/ReadClipper.java index d39ebedca..842965678 100644 --- a/public/gatk-utils/src/main/java/org/broadinstitute/gatk/utils/clipping/ReadClipper.java +++ b/public/gatk-utils/src/main/java/org/broadinstitute/gatk/utils/clipping/ReadClipper.java @@ -395,7 +395,7 @@ public class ReadClipper { /** * Checks if a read contains adaptor sequences. If it does, hard clips them out. * - * Note: To see how a read is checked for adaptor sequence see ReadUtils.getAdaptorBoundary() + * Note: To see how a read is checked for adaptor sequence see {@link ReadUtils::getAdaptorBoundary} * * @return a new read without adaptor sequence */ diff --git a/public/gatk-utils/src/test/java/org/broadinstitute/gatk/utils/sam/ReadUtilsUnitTest.java b/public/gatk-utils/src/test/java/org/broadinstitute/gatk/utils/sam/ReadUtilsUnitTest.java index b0677cd8f..6768f8949 100644 --- a/public/gatk-utils/src/test/java/org/broadinstitute/gatk/utils/sam/ReadUtilsUnitTest.java +++ b/public/gatk-utils/src/test/java/org/broadinstitute/gatk/utils/sam/ReadUtilsUnitTest.java @@ -25,8 +25,8 @@ package org.broadinstitute.gatk.utils.sam; -import htsjdk.samtools.SAMReadGroupRecord; import htsjdk.samtools.SAMFileHeader; +import htsjdk.samtools.SAMReadGroupRecord; import htsjdk.samtools.reference.ReferenceSequenceFile; import org.broadinstitute.gatk.utils.BaseTest; import org.broadinstitute.gatk.utils.BaseUtils; @@ -335,7 +335,7 @@ public class ReadUtilsUnitTest extends BaseTest { } @Test(dataProvider = "HasWellDefinedFragmentSizeData") - private void testHasWellDefinedFragmentSize(final String name, final GATKSAMRecord read, final boolean expected) { + public void testHasWellDefinedFragmentSize(final String name, final GATKSAMRecord read, final boolean expected) { Assert.assertEquals(ReadUtils.hasWellDefinedFragmentSize(read), expected); }