diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/poolseq/PowerBelowFrequencyWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/poolseq/PowerBelowFrequencyWalker.java index 548aacf6b..6c986d4ed 100644 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/poolseq/PowerBelowFrequencyWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/poolseq/PowerBelowFrequencyWalker.java @@ -1,6 +1,8 @@ package org.broadinstitute.sting.playground.gatk.walkers.poolseq; import org.broadinstitute.sting.gatk.walkers.LocusWalker; +import org.broadinstitute.sting.gatk.walkers.DataSource; +import org.broadinstitute.sting.gatk.walkers.By; import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker; import org.broadinstitute.sting.gatk.contexts.ReferenceContext; import org.broadinstitute.sting.gatk.contexts.AlignmentContext; @@ -22,6 +24,7 @@ import java.util.List; * Time: 9:44:35 AM * To change this template use File | Settings | File Templates. */ +@By(DataSource.REFERENCE) public class PowerBelowFrequencyWalker extends LocusWalker { @Argument(fullName="lodThreshold", shortName="lod", doc="Threshold for log likelihood ratio to be called a SNP. Defaults to 3.0", required = false) public double lodThresh = 3.0;