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Changed traversal type slightly 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1800 348d0f76-0448-11de-a6fe-93d51630548a
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chartl 2009-10-09 04:11:48 +00:00
parent a9f3d46fa8
commit 6d7f4481e4
1 changed files with 3 additions and 0 deletions
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3
java/src/org/broadinstitute/sting/playground/gatk/walkers/poolseq/PowerBelowFrequencyWalker.java
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@ -1,6 +1,8 @@
package org.broadinstitute.sting.playground.gatk.walkers.poolseq;
import org.broadinstitute.sting.gatk.walkers.LocusWalker;
import org.broadinstitute.sting.gatk.walkers.DataSource;
import org.broadinstitute.sting.gatk.walkers.By;
import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker;
import org.broadinstitute.sting.gatk.contexts.ReferenceContext;
import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
@ -22,6 +24,7 @@ import java.util.List;
* Time: 9:44:35 AM
* To change this template use File | Settings | File Templates.
*/
@By(DataSource.REFERENCE)
public class PowerBelowFrequencyWalker extends LocusWalker<Integer,Integer> {
@Argument(fullName="lodThreshold", shortName="lod", doc="Threshold for log likelihood ratio to be called a SNP. Defaults to 3.0", required = false)
public double lodThresh = 3.0;