From 6d6149b9a2ecdb6c401460ac10db6ee90de27ede Mon Sep 17 00:00:00 2001 From: Khalid Shakir Date: Wed, 5 Oct 2011 18:30:40 -0400 Subject: [PATCH] Updated gsalib gsa.read.gatkreport to return all reports, even those beginning with '.'. In PreQC using geom_blank() so MEDIAN_INSERT_SIZE plot doesn't crash on facet_grid(scales='free') when data doesn't contain points for 'RF' or 'TANDEM'. --- public/R/src/gsalib/R/gsa.read.gatkreport.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/public/R/src/gsalib/R/gsa.read.gatkreport.R b/public/R/src/gsalib/R/gsa.read.gatkreport.R index 011b5240d..46bbf7eda 100644 --- a/public/R/src/gsalib/R/gsa.read.gatkreport.R +++ b/public/R/src/gsalib/R/gsa.read.gatkreport.R @@ -99,5 +99,5 @@ gsa.read.gatkreport <- function(filename) { .gsa.assignGATKTableToEnvironment(tableName, tableHeader, tableRows, tableEnv); } - gatkreport = as.list(tableEnv); + gatkreport = as.list(tableEnv, all.names=TRUE); }