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Updating docs to include output

This commit is contained in:
Eric Banks 2011-09-15 16:17:54 -04:00
parent 4ef6a4598c
commit 6d02a34bfb
1 changed files with 10 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java
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@ -57,7 +57,16 @@ import java.util.*;
* *
* <h2>Output</h2> * <h2>Output</h2>
* <p> * <p>
* An annotated VCF. * An annotated VCF. Additionally, a table like the following will be output:
* <pre>
* Total number of samples assayed: 185
* Total number of records processed: 152
* Number of Hardy-Weinberg violations: 34 (22%)
* Number of no-call violations: 12 (7%)
* Number of homozygous variant violations: 0 (0%)
* Number of records passing all filters: 106 (69%)
* Number of passing records that are polymorphic: 98 (92%)
* </pre>
* </p> * </p>
* *
* <h2>Examples</h2> * <h2>Examples</h2>