diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java index ea8549474..8eaf976d0 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java @@ -57,7 +57,16 @@ import java.util.*; * *
- * An annotated VCF. + * An annotated VCF. Additionally, a table like the following will be output: + *
+ * Total number of samples assayed: 185 + * Total number of records processed: 152 + * Number of Hardy-Weinberg violations: 34 (22%) + * Number of no-call violations: 12 (7%) + * Number of homozygous variant violations: 0 (0%) + * Number of records passing all filters: 106 (69%) + * Number of passing records that are polymorphic: 98 (92%) + ** * *