diff --git a/java/src/org/broadinstitute/sting/gatk/dataSources/shards/AdaptiveShardStrategy.java b/java/src/org/broadinstitute/sting/gatk/dataSources/shards/AdaptiveShardStrategy.java deleted file mode 100644 index efc9d5159..000000000 --- a/java/src/org/broadinstitute/sting/gatk/dataSources/shards/AdaptiveShardStrategy.java +++ /dev/null @@ -1,58 +0,0 @@ -package org.broadinstitute.sting.gatk.dataSources.shards; - -import net.sf.samtools.SAMSequenceDictionary; - -/** - * - * User: aaron - * Date: Apr 6, 2009 - * Time: 7:18:19 PM - * - * The Broad Institute - * SOFTWARE COPYRIGHT NOTICE AGREEMENT - * This software and its documentation are copyright 2009 by the - * Broad Institute/Massachusetts Institute of Technology. All rights are reserved. - * - * This software is supplied without any warranty or guaranteed support whatsoever. Neither - * the Broad Institute nor MIT can be responsible for its use, misuse, or functionality. - * - */ - - -/** - * @author aaron - * @version 1.0 - * @date Apr 6, 2009 - *
- * Class AdaptiveShard - * - * A descriptions should go here. Blame aaron if it's missing. - */ -class AdaptiveShardStrategy extends ShardStrategy { - - // default the next size to 100,000 - private long nextShardSize = 100000; - - /** - * the constructor, taking a seq dictionary to parse out contigs - * - * @param dic the seq dictionary - */ - AdaptiveShardStrategy(SAMSequenceDictionary dic, long startSize) { - super(dic); - this.nextShardSize = startSize; - } - - public void setNextShardSize(long size) { - nextShardSize = size; - } - - /** - * This is how the various shards strategies implements their approach - * - * @return the next shard size - */ - protected long nextShardSize() { - return nextShardSize; - } -}