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Take (partial) ownership of phasing 1000G chr20 calls 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5147 348d0f76-0448-11de-a6fe-93d51630548a
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fromer 2011-01-31 21:49:41 +00:00
parent 1753f9d864
commit 6c99dc4dab
1 changed files with 1 additions and 3 deletions
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4
scala/qscript/oneoffs/depristo/phaseSamples.scala → scala/qscript/oneoffs/fromer/phaseSamples.scala
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@ -117,9 +117,7 @@ class CombineVariants(vcfsToCombine: List[File]) extends org.broadinstitute.stin
this.rodBind :+= RodBind(vcf.getName, "VCF", vcf)
}
// add the master call
this.rodBind :+= RodBind("master", "VCF", masterCalls)
this.variantMergeOptions = Some(org.broadinstitute.sting.gatk.contexts.variantcontext.VariantContextUtils.VariantMergeType.MASTER)
this.variantMergeOptions = Some(org.broadinstitute.sting.gatk.contexts.variantcontext.VariantContextUtils.VariantMergeType.UNION)
this.out = new File("phased.vcf")
}