CountsWithBases now handles indels

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adding base counts now iterates over the read's cigar string instead of the bases to handle insertions and deletions correctly.

* This commit broke other functionality that was relying on the incorrectly formed base counts.

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This commit is contained in:

Mauricio Carneiro 2011-08-26 14:41:16 -04:00

parent e132c97098

commit 6c8cafba63

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

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