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Commented some stuff out so that things compile. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@963 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kiran 2009-06-10 14:06:33 +00:00
parent dc6a9ca196
commit 6bb7f7e9d8
1 changed files with 8 additions and 8 deletions
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16
java/src/org/broadinstitute/sting/playground/gatk/walkers/ContrastiveGenotypers.java
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@ -30,10 +30,10 @@ public class ContrastiveGenotypers extends LocusWalker<Integer, Integer> {
caller_1b.metricsInterval = 6000;
caller_1b.printMetrics = false;
caller_1b.fourBaseMode = false;
caller_1b.retest = false;
caller_1b.qHom = 0.04;
caller_1b.qHet = 0.49;
caller_1b.qHomNonRef = 0.97;
//caller_1b.retest = false;
//caller_1b.qHom = 0.04;
//caller_1b.qHet = 0.49;
//caller_1b.qHomNonRef = 0.97;
caller_1b.lodThreshold = 5.0;
caller_1b.initialize();
caller_1b.reduceInit();
@ -43,10 +43,10 @@ public class ContrastiveGenotypers extends LocusWalker<Integer, Integer> {
caller_4b.metricsInterval = caller_1b.metricsInterval;
caller_4b.printMetrics = false;
caller_4b.fourBaseMode = true;
caller_4b.retest = true;
caller_4b.qHom = 0.04;
caller_4b.qHet = 0.49;
caller_4b.qHomNonRef = 0.97;
//caller_4b.retest = true;
//caller_4b.qHom = 0.04;
//caller_4b.qHet = 0.49;
//caller_4b.qHomNonRef = 0.97;
caller_4b.lodThreshold = 5.0;
caller_4b.initialize();
caller_4b.reduceInit();