diff --git a/scripts/TraverseTest.sh b/scripts/TraverseTest.sh
index b83cf95b4..cd4a42a54 100755
--- a/scripts/TraverseTest.sh
+++ b/scripts/TraverseTest.sh
@@ -1 +1 @@
-java -Xmx4096m -cp out/production/AnalysisTK:trunk/java/jars/functionalj.jar edu.mit.broad.sting.atk.AnalysisTK $*
+java -Xmx4096m -jar ../java/dist/AnalysisTK.jar $*
diff --git a/scripts/TraverseTestProf.sh b/scripts/TraverseTestProf.sh
index 18983a259..f6e2398ca 100755
--- a/scripts/TraverseTestProf.sh
+++ b/scripts/TraverseTestProf.sh
@@ -1 +1 @@
-java -Xmx4096m -agentlib:hprof=cpu=samples -cp out/production/AnalysisTK:trunk/java/jars/functionalj.jar edu.mit.broad.sting.atk.AnalysisTK $*
+java -Xmx4096m -agentlib:hprof=cpu=samples -jar ../java/dist/AnalysisTK.jar $*