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Fix performance tests 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3662 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-06-28 21:51:48 +00:00
parent dce2c17404
commit 6a23edd911
1 changed files with 2 additions and 0 deletions
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2
java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerPerformanceTest.java
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@ -18,6 +18,7 @@ public class IndelRealignerPerformanceTest extends WalkerTest {
" -D /humgen/gsa-hpprojects/GATK/data/dbsnp_129_hg18.rod" +
" -I " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.bam" +
" -L chr1:1-5,650,000" +
" --realignReadsWithBadMates" +
" -targetIntervals " + evaluationDataLocation + "NA12878.GAII.chr1.50MB.realigner.intervals",
0,
new ArrayList<String>(0));
@ -32,6 +33,7 @@ public class IndelRealignerPerformanceTest extends WalkerTest {
" -D /humgen/gsa-hpprojects/GATK/data/dbsnp_129_hg18.rod" +
" -I " + evaluationDataLocation + "NA12878.ESP.WEx.chr1.bam" +
" -L chr1:1-150,000,000" +
" --realignReadsWithBadMates" +
" -targetIntervals " + evaluationDataLocation + "NA12878.ESP.WEx.chr1.realigner.intervals",
0,
new ArrayList<String>(0));