diff --git a/perl/runReleaseSanityCheck.pl b/perl/runReleaseSanityCheck.pl index 9ec7a5462..a0b2fe003 100755 --- a/perl/runReleaseSanityCheck.pl +++ b/perl/runReleaseSanityCheck.pl @@ -1,13 +1,13 @@ #!/usr/bin/perl -# Usage:runReleaseSanityCheck [-sting ] [-dry] use Getopt::Long; $dry; $sting = "/humgen/gsa-scr1/ebanks/Sting_dev/dist/GenomeAnalysisTK.jar"; GetOptions( "dry!" => \$dry, - "sting=s" => \$junit); + "sting=s" => \$sting); $command_prefix = "java -Xmx4096m -jar $sting -R /seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta";