diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/tracks/builders/TribbleRMDTrackBuilder.java b/java/src/org/broadinstitute/sting/gatk/refdata/tracks/builders/TribbleRMDTrackBuilder.java index d1f31c92e..eeec135aa 100644 --- a/java/src/org/broadinstitute/sting/gatk/refdata/tracks/builders/TribbleRMDTrackBuilder.java +++ b/java/src/org/broadinstitute/sting/gatk/refdata/tracks/builders/TribbleRMDTrackBuilder.java @@ -140,7 +140,7 @@ public class TribbleRMDTrackBuilder extends PluginManager implemen // we might not know the index type, try loading with the default reader constructor logger.info("Attempting to blindly load " + inputFile + " as a tabix indexed file"); try { - return new Pair(new BasicFeatureSource(inputFile.getAbsolutePath(), createCodec(targetClass, name)),null); + return new Pair(BasicFeatureSource.getFeatureSource(inputFile.getAbsolutePath(), createCodec(targetClass, name)),null); } catch (IOException e) { throw new StingException("Unable to create feature reader from file " + inputFile); }