diff --git a/java/src/org/broadinstitute/sting/utils/genotype/HardyWeinbergCalculation.java b/java/src/org/broadinstitute/sting/utils/genotype/HardyWeinbergCalculation.java index c99a85502..6fd0d7cee 100755 --- a/java/src/org/broadinstitute/sting/utils/genotype/HardyWeinbergCalculation.java +++ b/java/src/org/broadinstitute/sting/utils/genotype/HardyWeinbergCalculation.java @@ -72,8 +72,7 @@ public final class HardyWeinbergCalculation { //make sure numbers aren't screwy if (hets > rare) { - throw new IllegalArgumentException("HW test: " + hets + " heterozygotes but only " + - rare + " rare alleles."); + return -1; } double[] tailProbs = new double[rare + 1];