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numThreads > 1 any time you have -nt > 1 silly

This commit is contained in:
Mark DePristo 2012-08-26 14:36:13 -04:00
parent faacacd6c0
commit 68c5142d2d
1 changed files with 0 additions and 2 deletions
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2
public/java/src/org/broadinstitute/sting/gatk/executive/MicroScheduler.java
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@ -138,8 +138,6 @@ public abstract class MicroScheduler implements MicroSchedulerMBean {
if (walker instanceof ReadWalker) { if (walker instanceof ReadWalker) {
traversalEngine = numThreads > 1 ? new TraverseReadsNano(numThreads) : new TraverseReads(); traversalEngine = numThreads > 1 ? new TraverseReadsNano(numThreads) : new TraverseReads();
} else if ( numThreads > 1 ) {
throw new IllegalArgumentException("BUG: numThreads > 1 but this is only allowed for ReadWalkers");
} else if (walker instanceof LocusWalker) { } else if (walker instanceof LocusWalker) {
traversalEngine = new TraverseLoci(); traversalEngine = new TraverseLoci();
} else if (walker instanceof DuplicateWalker) { } else if (walker instanceof DuplicateWalker) {