From 68c5142d2d952a3abaeb0604ce60b47d8466e654 Mon Sep 17 00:00:00 2001
From: Mark DePristo <depristo@broadinstitute.org>
Date: Sun, 26 Aug 2012 14:36:13 -0400
Subject: [PATCH] numThreads > 1 any time you have -nt > 1 silly

---
 .../org/broadinstitute/sting/gatk/executive/MicroScheduler.java | 2 --
 1 file changed, 2 deletions(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/executive/MicroScheduler.java b/public/java/src/org/broadinstitute/sting/gatk/executive/MicroScheduler.java
index 9b4fe53ed..70201a6cc 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/executive/MicroScheduler.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/executive/MicroScheduler.java
@@ -138,8 +138,6 @@ public abstract class MicroScheduler implements MicroSchedulerMBean {
 
         if (walker instanceof ReadWalker) {
             traversalEngine = numThreads > 1 ? new TraverseReadsNano(numThreads) : new TraverseReads();
-        } else if ( numThreads > 1 ) {
-            throw new IllegalArgumentException("BUG: numThreads > 1 but this is only allowed for ReadWalkers");
         } else if (walker instanceof LocusWalker) {
             traversalEngine = new TraverseLoci();
         } else if (walker instanceof DuplicateWalker) {