From 6839c194cb37b594d500f4233895a36f4d661469 Mon Sep 17 00:00:00 2001
From: aaron <aaron@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 12 May 2010 19:26:58 +0000
Subject: [PATCH] although holding on to memories can be fun, it's bound to
 hurt performance.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3355 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../datasources/providers/ReadBasedReferenceOrderedView.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/datasources/providers/ReadBasedReferenceOrderedView.java b/java/src/org/broadinstitute/sting/gatk/datasources/providers/ReadBasedReferenceOrderedView.java
index 25a4a40d1..e213677ae 100644
--- a/java/src/org/broadinstitute/sting/gatk/datasources/providers/ReadBasedReferenceOrderedView.java
+++ b/java/src/org/broadinstitute/sting/gatk/datasources/providers/ReadBasedReferenceOrderedView.java
@@ -163,7 +163,7 @@ class WindowedData {
     public void close() {
         if (states == null) return;
         for (RMDDataState state : states)
-            if (state.iterator instanceof FlashBackIterator) state.dataSource.close((FlashBackIterator) state.iterator);
+            state.dataSource.close( state.iterator );
 
         // Clear out the existing data so that post-close() accesses to this data will fail-fast.
         states = null;