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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1378 348d0f76-0448-11de-a6fe-93d51630548a

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sjia 2009-08-04 21:23:01 +00:00
parent 45ab212f22
commit 68309408e4
1 changed files with 2 additions and 0 deletions
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java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java
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@ -231,6 +231,8 @@ public class CallHLAWalker extends LocusWalker<Integer, Pair<Long, Long>>{
Scores.put("GT", mLikelihoods[8]); Scores.put("GT", mLikelihoods[8]);
Scores.put("TT", mLikelihoods[9]); Scores.put("TT", mLikelihoods[9]);
//Update probabilities for combinations of alleles //Update probabilities for combinations of alleles
//For each HLA allele //For each HLA allele
String r1 = "", r2 = "", s1 = "", s2 = ""; String r1 = "", r2 = "", s1 = "", s2 = "";