diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java index 0f5243d95..68d4282d2 100644 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java @@ -231,6 +231,8 @@ public class CallHLAWalker extends LocusWalker>{ Scores.put("GT", mLikelihoods[8]); Scores.put("TT", mLikelihoods[9]); + + //Update probabilities for combinations of alleles //For each HLA allele String r1 = "", r2 = "", s1 = "", s2 = "";