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Hmm, thought I got all the md5s last time. Apparently not.

This commit is contained in:
Eric Banks 2012-10-26 16:10:12 -04:00
parent b0dcc2c78e
commit 682a72faf7
1 changed files with 3 additions and 3 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

6
public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java
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@ -157,7 +157,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
public void testSLOD() { public void testSLOD() {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
"-T UnifiedGenotyper -R " + b36KGReference + " --computeSLOD --no_cmdline_in_header -glm BOTH --dbsnp " + b36dbSNP129 + " -I " + validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SLX.bam -o %s -L 1:10,000,000-10,010,000", 1, "-T UnifiedGenotyper -R " + b36KGReference + " --computeSLOD --no_cmdline_in_header -glm BOTH --dbsnp " + b36dbSNP129 + " -I " + validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SLX.bam -o %s -L 1:10,000,000-10,010,000", 1,
Arrays.asList("9f95cfe14d53a697c58247833bfd72a6")); Arrays.asList("6ccb9bd88934e4272d0ce362dd35e603"));
executeTest("test SLOD", spec); executeTest("test SLOD", spec);
} }
@ -361,7 +361,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
baseCommandIndelsb37 + " --genotyping_mode GENOTYPE_GIVEN_ALLELES -out_mode EMIT_ALL_SITES -alleles " + privateTestDir + vcf + " -I " + validationDataLocation + baseCommandIndelsb37 + " --genotyping_mode GENOTYPE_GIVEN_ALLELES -out_mode EMIT_ALL_SITES -alleles " + privateTestDir + vcf + " -I " + validationDataLocation +
"NA12878.HiSeq.WGS.bwa.cleaned.recal.hg19.20.bam -o %s -L " + validationDataLocation + vcf, 1, "NA12878.HiSeq.WGS.bwa.cleaned.recal.hg19.20.bam -o %s -L " + validationDataLocation + vcf, 1,
Arrays.asList("d76eacc4021b78ccc0a9026162e814a7")); Arrays.asList("9a7cd58b9e3d5b72608c0d529321deba"));
executeTest("test GENOTYPE_GIVEN_ALLELES with no evidence in reads", spec); executeTest("test GENOTYPE_GIVEN_ALLELES with no evidence in reads", spec);
} }
@ -457,7 +457,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
@Test @Test
public void testReducedBamSNPs() { public void testReducedBamSNPs() {
testReducedCalling("SNP", "9ba4867cadb366746ee63e7a4afdb95e"); testReducedCalling("SNP", "e7fc11baf208a1bca7b462d3148c936e");
} }
@Test @Test