diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java index 2a17435aa..49651100a 100755 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java @@ -157,7 +157,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { public void testSLOD() { WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( "-T UnifiedGenotyper -R " + b36KGReference + " --computeSLOD --no_cmdline_in_header -glm BOTH --dbsnp " + b36dbSNP129 + " -I " + validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SLX.bam -o %s -L 1:10,000,000-10,010,000", 1, - Arrays.asList("9f95cfe14d53a697c58247833bfd72a6")); + Arrays.asList("6ccb9bd88934e4272d0ce362dd35e603")); executeTest("test SLOD", spec); } @@ -361,7 +361,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( baseCommandIndelsb37 + " --genotyping_mode GENOTYPE_GIVEN_ALLELES -out_mode EMIT_ALL_SITES -alleles " + privateTestDir + vcf + " -I " + validationDataLocation + "NA12878.HiSeq.WGS.bwa.cleaned.recal.hg19.20.bam -o %s -L " + validationDataLocation + vcf, 1, - Arrays.asList("d76eacc4021b78ccc0a9026162e814a7")); + Arrays.asList("9a7cd58b9e3d5b72608c0d529321deba")); executeTest("test GENOTYPE_GIVEN_ALLELES with no evidence in reads", spec); } @@ -457,7 +457,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { @Test public void testReducedBamSNPs() { - testReducedCalling("SNP", "9ba4867cadb366746ee63e7a4afdb95e"); + testReducedCalling("SNP", "e7fc11baf208a1bca7b462d3148c936e"); } @Test