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--fdr_filter_level isn't mandatory 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3748 348d0f76-0448-11de-a6fe-93d51630548a
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rpoplin 2010-07-08 22:48:30 +00:00
parent 5d39cd5db8
commit 67f1589652
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/ApplyVariantCuts.java
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@ -65,7 +65,7 @@ public class ApplyVariantCuts extends RodWalker<Integer, Integer> {
private String TRANCHE_FILENAME = "optimizer.dat.tranches";
@Argument(fullName="outputVCFFile", shortName="outputVCF", doc="The output filtered VCF file", required=true)
private String OUTPUT_FILENAME = "optimizer.vcf";
@Argument(fullName="fdr_filter_level", shortName="fdr_filter_level", doc="The FDR level at which to start filtering.", required=true)
@Argument(fullName="fdr_filter_level", shortName="fdr_filter_level", doc="The FDR level at which to start filtering.", required=false)
private double FDR_FILTER_LEVEL = 0.0;