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Fixed VariantEval rod binding names. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4342 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kshakir 2010-09-24 14:52:51 +00:00
parent 1931b2e1bd
commit 67bcf3a7e4
1 changed files with 2 additions and 2 deletions
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4
scala/qscript/examples/ExampleUnifiedGenotyper.scala
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@ -61,7 +61,7 @@ class ExampleUnifiedGenotyper extends QScript {
genotyper.input_file :+= qscript.bamFile
genotyper.out = swapExt(qscript.bamFile, "bam", "unfiltered.vcf")
evalUnfiltered.rodBind :+= RodBind("vcf", "VCF", genotyper.out)
evalUnfiltered.rodBind :+= RodBind("eval", "VCF", genotyper.out)
evalUnfiltered.out = swapExt(genotyper.out, "vcf", "eval")
variantFilter.rodBind :+= RodBind("vcf", "VCF", genotyper.out)
@ -69,7 +69,7 @@ class ExampleUnifiedGenotyper extends QScript {
variantFilter.filterName = filterNames
variantFilter.filterExpression = filterExpressions
evalFiltered.rodBind :+= RodBind("vcf", "VCF", variantFilter.out)
evalFiltered.rodBind :+= RodBind("eval", "VCF", variantFilter.out)
evalFiltered.out = swapExt(variantFilter.out, "vcf", "eval")
add(genotyper, evalUnfiltered)