From 6780476fb5ab15d3b821dbd0cbee9852a049a363 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 22 Sep 2009 19:46:32 +0000
Subject: [PATCH] updated to deal with new dbSNP rod

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1687 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../walkers/fasta/FastaAlternateReferenceIntegrationTest.java | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/fasta/FastaAlternateReferenceIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/fasta/FastaAlternateReferenceIntegrationTest.java
index 0ae8b80a3..bcb062b84 100755
--- a/java/test/org/broadinstitute/sting/gatk/walkers/fasta/FastaAlternateReferenceIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/fasta/FastaAlternateReferenceIntegrationTest.java
@@ -18,13 +18,13 @@ public class FastaAlternateReferenceIntegrationTest extends WalkerTest {
         WalkerTestSpec spec2 = new WalkerTestSpec(
                 "-T FastaAlternateReferenceMaker -R /broad/1KG/reference/human_b36_both.fasta -B indels,PointIndel,/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12878.chr1_10mb_11mb.slx.indels -B snpmask,dbsnp,/humgen/gsa-scr1/GATK_Data/dbsnp_129_b36.rod -L 1:10,075,000-10,075,380;1:10,093,447-10,093,847;1:10,271,252-10,271,452 -o %s",
                  1,
-                 Arrays.asList("b7c0d95c1bf1ea69f5a7a58dd4d57685"));
+                 Arrays.asList("3a48986c3832a768b478c3e95f994b0f"));
         executeTest("testFastaAlternateReferenceIndels", spec2);
 
         WalkerTestSpec spec3 = new WalkerTestSpec(
                 "-T FastaAlternateReferenceMaker -sequenom -R /broad/1KG/reference/human_b36_both.fasta -B indels,PointIndel,/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12878.chr1_10mb_11mb.slx.indels -B snpmask,dbsnp,/humgen/gsa-scr1/GATK_Data/dbsnp_129_b36.rod -L 1:10,075,000-10,075,380;1:10,093,447-10,093,847;1:10,271,252-10,271,452 -o %s",
                  1,
-                 Arrays.asList("3137b0c90ba13fb648be51c14fdb296f"));
+                 Arrays.asList("b53b067a3bdada202dba7d3c382ae1d0"));
         executeTest("testFastaAlternateReferenceIndelSequenom", spec3);
 	
         WalkerTestSpec spec4 = new WalkerTestSpec(