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Merge pull request #1230 from broadinstitute/rhl_htsjdk_picard_1.141 

Rhl htsjdk picard 1.141
This commit is contained in:
Ron Levine 2015-11-20 19:47:54 -05:00
parent dc0e32e3aa 0b3b09e3ff
commit 6722ac8e8a
2 changed files with 3 additions and 3 deletions
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2
public/gatk-engine/src/test/java/org/broadinstitute/gatk/engine/arguments/CramIntegrationTest.java
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@ -39,7 +39,7 @@ public class CramIntegrationTest extends WalkerTest {
@DataProvider(name="cramData") @DataProvider(name="cramData")
public Object[][] getCRAMData() { public Object[][] getCRAMData() {
return new Object[][] { return new Object[][] {
{"PrintReads", "exampleBAM.bam", "", "cram", "424c725c4ffe7215e358ecf5abd5e5e8"}, {"PrintReads", "exampleBAM.bam", "", "cram", "97470174cd313a4d200b2a96ffd73e99"},
{"PrintReads", "exampleCRAM.cram", "", "cram", "424c725c4ffe7215e358ecf5abd5e5e8"}, {"PrintReads", "exampleCRAM.cram", "", "cram", "424c725c4ffe7215e358ecf5abd5e5e8"},
{"PrintReads", "exampleCRAM.cram", "", "bam", "247805098718dd74b8a871796424d359"}, {"PrintReads", "exampleCRAM.cram", "", "bam", "247805098718dd74b8a871796424d359"},
{"PrintReads", "exampleCRAM.cram", " -L chr1:200", "bam", "a5b26631cd89f86f6184bcac7bc9c9ca"}, {"PrintReads", "exampleCRAM.cram", " -L chr1:200", "bam", "a5b26631cd89f86f6184bcac7bc9c9ca"},

4
public/gatk-root/pom.xml
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@ -44,8 +44,8 @@
<test.listeners>org.testng.reporters.FailedReporter,org.testng.reporters.JUnitXMLReporter,org.broadinstitute.gatk.utils.TestNGTestTransformer,org.broadinstitute.gatk.utils.GATKTextReporter,org.uncommons.reportng.HTMLReporter</test.listeners> <test.listeners>org.testng.reporters.FailedReporter,org.testng.reporters.JUnitXMLReporter,org.broadinstitute.gatk.utils.TestNGTestTransformer,org.broadinstitute.gatk.utils.GATKTextReporter,org.uncommons.reportng.HTMLReporter</test.listeners>
<!-- Version numbers for picard and htsjdk --> <!-- Version numbers for picard and htsjdk -->
<htsjdk.version>1.140</htsjdk.version> <htsjdk.version>1.141</htsjdk.version>
<picard.version>1.140</picard.version> <picard.version>1.141</picard.version>
</properties> </properties>
<!-- Dependency configuration (versions, etc.) --> <!-- Dependency configuration (versions, etc.) -->