From 670ae814b33982d9e0e6dc38e9e174b7467c4cd9 Mon Sep 17 00:00:00 2001
From: chartl <chartl@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 2 Dec 2010 18:39:59 +0000
Subject: [PATCH] Get rid of files from the grep string

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4773 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../broadinstitute/sting/queue/pipeline/ProjectManagement.scala | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scala/src/org/broadinstitute/sting/queue/pipeline/ProjectManagement.scala b/scala/src/org/broadinstitute/sting/queue/pipeline/ProjectManagement.scala
index 6cb7f7700..8f3e30f0b 100755
--- a/scala/src/org/broadinstitute/sting/queue/pipeline/ProjectManagement.scala
+++ b/scala/src/org/broadinstitute/sting/queue/pipeline/ProjectManagement.scala
@@ -70,7 +70,7 @@ class ProjectManagement(stingPath: String) {
     call.intervals :+= intervals
     call.memoryLimit = Some(4)
     call.out = output
-    call.rodBind ++= likelihoods.map( a => new RodBind(a.getName.replace(".vcf",""),"vcf",a) )
+    call.rodBind ++= likelihoods.map( a => new RodBind("variant"+a.getName.replace(".vcf",""),"vcf",a) )
 
     return call
   }