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Fixed nasty bug in BQSR csv file creation: 

numbers larger than 999 in the Errors column were printed out with commas (which looks like a separate column).

This wasn't caught earlier because there are no integration tests covering the csv.  I'll add one into unstable in a sec.
This commit is contained in:
Eric Banks 2012-11-09 08:33:55 -05:00
parent 15b8c08132
commit 66cbaaee31
1 changed files with 1 additions and 1 deletions
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2
public/java/src/org/broadinstitute/sting/utils/recalibration/RecalDatum.java
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@ -199,7 +199,7 @@ public class RecalDatum {
@Override @Override
public String toString() { public String toString() {
return String.format("%.2f,%,2f,%.2f", getNumObservations(), getNumMismatches(), getEmpiricalQuality()); return String.format("%.2f,%.2f,%.2f", getNumObservations(), getNumMismatches(), getEmpiricalQuality());
} }
public String stringForCSV() { public String stringForCSV() {