From 66aee613e250c21172a5a60b9f31cf8946cbab3e Mon Sep 17 00:00:00 2001
From: Mark DePristo <depristo@broadinstitute.org>
Date: Sun, 8 Jul 2012 11:41:07 -0400
Subject: [PATCH] Bugfix for set key in mergeInfoWithMaxAC.

-- Previous version was always setting set=source of info with highest AC.  Should actually have been set to the set annotation value itself.
---
 .../sting/utils/variantcontext/VariantContextUtils.java       | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContextUtils.java b/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContextUtils.java
index 843838972..d7e072980 100755
--- a/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContextUtils.java
+++ b/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContextUtils.java
@@ -644,7 +644,9 @@ public class VariantContextUtils {
 
             if ( setKey != null ) {
                 attributes.put(setKey, setValue);
-                if( mergeInfoWithMaxAC && vcWithMaxAC != null ) { attributesWithMaxAC.put(setKey, vcWithMaxAC.getSource()); }
+                if( mergeInfoWithMaxAC && vcWithMaxAC != null ) {
+                    attributesWithMaxAC.put(setKey, setValue);
+                }
             }
         }