diff --git a/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContextUtils.java b/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContextUtils.java index 843838972..d7e072980 100755 --- a/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContextUtils.java +++ b/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContextUtils.java @@ -644,7 +644,9 @@ public class VariantContextUtils { if ( setKey != null ) { attributes.put(setKey, setValue); - if( mergeInfoWithMaxAC && vcWithMaxAC != null ) { attributesWithMaxAC.put(setKey, vcWithMaxAC.getSource()); } + if( mergeInfoWithMaxAC && vcWithMaxAC != null ) { + attributesWithMaxAC.put(setKey, setValue); + } } }