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Genotype check should be case-insensitive 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1649 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-09-18 03:23:30 +00:00
parent c186a49d55
commit 66a4de9a1d
1 changed files with 2 additions and 2 deletions
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2
java/src/org/broadinstitute/sting/playground/gatk/walkers/concordance/SimpleVenn.java
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@ -55,7 +55,7 @@ public class SimpleVenn implements ConcordanceType {
printVariant(set2_writer, call2); printVariant(set2_writer, call2);
// intersection (concordant) // intersection (concordant)
else if ( call1.getAltBasesFWD().equals(call2.getAltBasesFWD()) ) else if ( call1.getAltBasesFWD().equalsIgnoreCase(call2.getAltBasesFWD()) )
printVariant(intersect_writer, call1); printVariant(intersect_writer, call1);
// intersection (discordant) // intersection (discordant)