Bug fix in custom override of queryOverlapping.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2743 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-29 21:35:59 +00:00 · 2010-01-29 21:35:59 +00:00 · 668c7da33d
parent c6cc844e55
commit 668c7da33d
1 changed files with 4 additions and 1 deletions
--- a/java/src/net/sf/samtools/BAMFileReader2.java
+++ b/java/src/net/sf/samtools/BAMFileReader2.java
@ -565,7 +565,10 @@ class BAMFileReader2
         * Closes down the existing iterator.
         */
        public void close() {
-            wrappedIterator.close();
+            if (this != mCurrentIterator) {
+                throw new IllegalStateException("Attempt to close non-current iterator");
+            }
+            mCurrentIterator = null;
        }

        /**